En gras les auteurs membres de l’équipe, en italique les doctorants encadrés.

2022

Barro  M, Wonni I, Simonin  M, Kassankogno  AI, Klonowska A, Moulin L, Béna  G, Somda I, Brunel C, Tollenaere C. (2022). The impact of the rice production system (irrigated vs lowland) on root-associated microbiome from farmer's fields in western Burkina Faso. FEMS Microbiol. Ecol. https://doi.org/10.1093/femsec/fiac085

Cociancich S, Leclere V. (2022). Editorial for the Special Issue "Microbial Nonribosomal Synthesis of Secondary Metabolites". Microorganisms. 10(5):1064. https://doi.org/10.3390/microorganisms10051064

Duban M, Cociancich S, Leclere V. (2022). Nonribosomal Peptide Synthesis Definitely Working Out of the Rules. Microorganisms. 10(3).  https://doi.org/10.3390/microorganisms10030577

Hugouvieux‐Cotte‐Pattat N, Royer M, Gueguen E, Le Guen P, Süssmuth R, Reverchon S, Cociancich S. (2022). Specificity and genetic polymorphism in the Vfm quorum sensing system of plant pathogenic bacteria of the genus Dickeya. Environmental Microbiology, 17 p. https://doi.org/10.1111/1462-2920.15889

Masson AS, Vermeire ML, Leng V, Simonin M, Tivet F, Thi HN, Brunel C,  Suong M, Kuok F, Moulin L, Bellafiore S. (2022). Enrichment in biodiversity and maturation of the soil food web under conservation agriculture is associated with suppression of rice-parasitic nematodes. Agriculture Ecosystems & Environment. 331. https://doi.org/10.1016/j.agee.2022.107913.

Nguyen PV, Bien TL, Ton LB, Le Don D, Wright MK, Mantelin S, Petitot A, Fernandez D, Bellafiore S. (2022). Meloidogyne-SP4 effector gene silencing reduces reproduction of root-knot nematodes in rice (Oryza sativa). Nematology. (2022). https://doi.org/10.1163/15685411-bja10152

Nguyen HT, Mantelin S, Ha CV, Lorieux M, Jones JT, Mai CD, Bellafiore S. (2022). Insights Into the Genetics of the Zhonghua 11 Resistance to Meloidogyne graminicola and Its Molecular Determinism in Rice. Front Plant Sci. https://doi.org/10.3389/fpls.2022.854961

Taha K,  El Attar I,   Hnini M,  Raif A,  Bena G, Aurag J, Berraho AB. (2022). Beneficial effect of Rhizobium laguerreae co-inoculated with native Bacillus sp. and Enterobacter aerogenes on lentil growth under drought stress. Rhizosphere. 22. https://doi.org/10.1016/j.rhisph.2022.100523

Wallner A, Busset N, Lachat J, Guigard L, King E, Rimbault I, Mergaert P, Bena G, Moulin L. (2022). Differential Genetic Strategies of Burkholderia vietnamiensis and Paraburkholderia kururiensis for Root Colonization of Oryza sativa subsp. japonica and O. sativa subsp. indica, as Revealed by Transposon Mutagenesis Sequencing. Appl. Environ. Microbiol. 88(14). https://doi.org/10.1128/aem.00642-22

2021

Barro M, Kassankogno AI, Wonni I, Sérémé D, Somda I, Kabore KH, Béna G, Brugidou C, Tharreau D, Tollenaere C. (2021). Spatiotemporal survey of multiple rice diseases in irrigated areas compared to rainfed lowlands in the western Burkina Faso. Plant Disease, 105 (12): 3889-3899. https://doi.org/10.1094/PDIS-03-21-0579-RE.

Bena G, Fory PA, Echeverri Rico J, Mosquera GM. (2021). VNTR Typing of the Bacterial Rice Pathogen Burkholderia glumae Reveals the Coexistence of Several Diverging Lineages in a Single Field in Colombia. Plant Disease.  105(11). https://doi.org/10.1094/PDIS-02-21-0235-RE

Nguye PV, Tran TB, Nguyen PT, Nguyen LNT, Bien TLT, Ton LB, Le TTH, Ton AT, Nguyen QCB, Huynh BV, Le DD, Bellafiore S. (2021). The response of rice varieties to Meloidogyne graminicola from the Mekong Delta, Vietnam. Nematology, 23 (10): 1153-1170. https://doi.org/10.1163/15685411-bja10102

Thi Phan N, Besnard G, Ouazahrou R, Sanchez WS, Gil L, Manzi S, Bellafiore S. (2021). Genome sequence of the coffee root-knot nematode Meloidogyne exigua. Journal of Nematology, 53: 1-6. https://doi.org/10.21307/jofnem-2021-065

Thoresen J,  Vermeire ML, Venter Z, Wolfaard G, Adams Krumins J, Cramer M,  Hawkins HJ. (2021). Fire and herbivory shape soil arthropod communities through habitat heterogeneity and nutrient cycling in savannas. Global Ecology and Conservation 25 (2021) e01413

Vannini C, Domingo G, Fiorilli V, Seco DG, Novero M, Marsoni M, Wisniewski‐Dye F, Bracale M, Moulin L, Bonfante P. (2021). Proteomic analysis reveals how pairing of a Mycorrhizal fungus with plant growth‐promoting bacteria modulates growth and defense in wheat. Plant, Cell and Environment, 44 (6): 1946-1960. https://doi.org/10.1111/pce.14039

Vermeire ML, Bottinelli N, Villenave C, Jouquet P, Thị H, Nguyễ, Maeght JL, Aribi J, Aroui Boukbida H, Tran MT, Masson AS, Chapuis E, Bellafiore S. (2021). Comparison of nematode communities in anecic earthworm casts and adjacent soil reveal a land use-independent trophic group signature. Global Ecology and Conservation, 27: e01565. https://doi.org/10.1016/j.gecco.2021.e01565

Wallner A, Moulin L, Busset N, Rimbault I, Béna G. (2021). Genetic diversity of type 3 secretion system in Burkholderia s.l. and links with plant host adaptation. Frontiers in Microbiology, 12: 761215. https://doi.org/10.3389/fmicb.2021.761215

2020

Bangratz M, Wonni I, Kini K, Sondo M, Brugidou C, Béna G , Gnacko F, Barro M, Koebnik R, Silué D, Tollenaere C. (2020). Design of a new multiplex PCR assay for rice pathogenic bacteria detection and its application to infer disease incidence and detect co-infection in rice fields in Burkina Faso. PLoS One. DOI: 10.1371/journal.pone.0232115

Brunel C, Da Silva AMF, Gros R. (2020). Environmental Drivers of Microbial Functioning in Mediterranean Forest Soils.  DOI: 10.1007/s00248-020-01518-5

Brunel C, Pouteau R, Dawson W, Pester M, Ramirez KS, Van Kleunen M. (2020). Towards Unraveling Macroecological Patterns in Rhizosphere Microbiomes. DOI: 10.1016/j.tplants.2020.04.015

Caradonia F, Ronga D, Fiore A, Barbieri R, Moulin L , Terzi V, Francia E. (2020). Biostimulants and cherry rootstock increased tomato fruit yield and quality in sustainable farming systems. Italian Journal of Agronomy. 15(2): 121-131.  DOI: 10.4081/ija.2020.1553

de la Fuente Cantó C, Simonin M, King E, Moulin L , Bennett MJ, Castrillo G, Laplaze L. (2020). An extended root phenotype: the rhizosphere, its formation and impacts on plant fitness. Plant J. DOI: 10.1111/tpj.14781

Klonowska A, Moulin L , Ardley JK, Gollagher MM, Zandberg JD, Marinova DV, Huntemann M, Reddy TBK, Varghese NJ, Woyke T, Ivanona N, Seshadri R, Kyrpides N, Reeve WG. (2020). Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil. BMC Genomics. DOI: 10.1186/s12864-020-6623-z

Masson AS, Bich HH, Simonin M, Thi HN, Czernic P, Moulin L, Bellafiore S. (2020). Deep modifications of the microbiome of rice roots infected by the parasitic nematode Meloidogyne graminicola in highly infested fields in Vietnam. Fems Microbiol. Ecol. doi: 10.1093/femsec/fiaa099.

Nguyen TH, Mai HTT, Moukouanga D, Lebrun M, Bellafiore S , Champion A. (2020). CRISPR/Cas9-Mediated Gene Editing of the Jasmonate Biosynthesis OsAOC Gene in rice. Methods Mol Biol. doi: 10.1007/978-1-0716-0142-6_15.

Phan NT, Orjuela J, Danchin EGJ, Klopp C, Perfus-Barbeoch L, Kozlowski DK, Koutsovoulos GD, Lopez-Roques C, Bouchez O, Zahm M, Besnard G, Bellafiore S . (2020). Genome structure and content of the rice root-knot nematode (Meloidogyne graminicola). Ecology and Evolution.  DOI: 10.1002/ece3.6680

Simonin M, Dasilva C, Terzi V, Ngonkeu ELM, Diouf D, Kane A, Béna G, Moulin L . (2020). Influence of plant genotype and soil on the wheat rhizosphere microbiome: Evidences for a core microbiome across eight African and European soils. FEMS Microbiol. Ecol. DOI: 10.1093/femsec/fiaa067

Zhang Z, Liu Y, Brunel C, van Kleunen M. (2020). Soil-microorganism-mediated invasional meltdown in plants. Nat Ecol Evol. 2020 Dec;4(12):1612-1621. doi: 10.1038/s41559-020-01311-0

Zhang Z, Liu Y, Brunel C, van Kleunen M. (2020). Evidence for Elton's diversity-invasibility hypothesis from belowground. Ecology 2020 Dec;101(12):e03187. doi: 10.1002/ecy.3187

2019

Besnard G, Thi-Phan N, Ho-Bich H, Dereeper A , Trang Nguyen H, Queneherve P, Aribi J, Bellafiore S . (2019). On the Close Relatedness of Two Rice-Parasitic Root-Knot Nematode Species and the Recent Expansion of Meloidogyne graminicola in Southeast Asia. Genes (Basel). DOI: 10.3390/genes10020175

Caradonia F, Francia E, Morcia C, Ghizzoni R, Moulin L , Terzi V, Ronga D. (2019). Arbuscular Mycorrhizal Fungi and Plant Growth Promoting Rhizobacteria Avoid Processing Tomato Leaf Damage during Chilling Stress. Agronomy Basel. 9(6).  DOI: 10.3390/agronomy9060299.

Daubech B, Poinsot V, Klonowska A , Capela D, Chaintreuil C, Moulin L, Marchetti M, Masson-Boivin C. (2019). noeM, a New Nodulation Gene Involved in the Biosynthesis of Nod Factors with an Open-Chain Oxidized Terminal Residue and in the Symbiosis with Mimosa pudica. MPMI. DOI: 10.1094/MPMI-06-19-0168-R

de Lajudie PM, Andrews M, Ardley J, Eardly B, jumas-Bilak E, Kuzmanovic N, Lassalle F, Kindstrom K, Mhamdi R, Martinez-Romero E, Moulin L , Mousavi SA, Nesme X, Peix A, Pulawska J, Steenkamp E, Stepkowski T, Tian CF, Vinuesa P, Wei G, Willems A, Zilli J, Young P. (2019). Minimal standards for the description of new genera and species of rhizobia and agrobacteria. Int J Syst Evol Microbiol. DOI: 0.1099/ijsem.0.003426

King E,  Wallner A,  Rimbault I ,  Barrachina C,  Klonowska A,  Moulin A,   Czernic P . (2019). Monitoring of Rice Transcriptional Responses to Contrasted Colonizing Patterns of Phytobeneficial Burkholderia s.l. Reveals a Temporal Shift in JA Systemic Response. Frontiers in Plant Science 10:1141. doi: 10.3389/fpls.2019.01141

To HTM, Nguyen, Dang NTM, Nguyen NH, Bui TX, Lavarenne J, Phung NTP, Gantet P, Lebrun M, Bellafiore S , Champion A. (2019). Unraveling the Genetic Elements Involved in Shoot and Root Growth Regulation by Jasmonate in Rice Using a Genome-Wide Association Study. Rice. 12(1):  DOI: 10.1186/s12284-019-0327-5 

Trang Nguyen Hieu, Thi Mai Huong, Lebrun M, Bellafiore S , Champion A. (2019). Jasmonates-the Master Regulator of Rice Development, Adaptation and Defense. Plants. 8(9): DOI:10.3390/plants8090339

Vincent B, Juillot F, Fritsch E, Klonowska A , Gerbert N, Acherar S, Grangeteau C, Hannibal L, Galiana A, Ducousso M, Jourand P. (2019). A leguminous species exploiting alpha- and beta-rhizobia for adaptation to ultramafic and volcano-sedimentary soils: an endemic Acacia spirorbis model from New Caledonia. FEMS Microbiol. Ecol. DOI: 10.1093/femsec/fiz099

Wallner A, King E, Ngonkeu ELM, Moulin L, Bena G. (2019). Genomic analyses of Burkholderia cenocepacia reveal multiple species with differential host-adaptation to plants and humans. BMC Genomics 20, 803 (2019) doi:10.1186/s12864-019-6186-z

2018

Bournaud C, James EK, de Faria SM, Lebrun M, Melkonian R, Duponnois R, Tisseyre P, Moulin L , Prin Y. (2018). Interdependency of efficient nodulation and arbuscular mycorrhization in Piptadenia gonoacantha, a Brazilian legume tree; Plant Cell and Environment. 41(9): 2008-2020.  DOI: 10.1111/pce.13095. 

Brottier L, Chaintreuil C, Simion P, Scornavacca C, Rivallan R, Mournet P, Moulin L , Lewis GP, Fardoux J, Brown SC, Gomez-Pacheco M, Bourges M, Hervouet C, Gueye M, Duponnois R, Ramanankierana H, Randriambanona H, Vandrot H, Zabaleta M, DasGupta M, D'Hont A, Giraud E, Arrighi JF. (2018). A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses. BMC Plant Biology. 18.  DOI: 10.1186/s12870-018-1567-z 

Clerissi C, Touchon M, Capela D, Tang MX, Cruveiller S, Parker MA, Moulin L , Masson-Boivin C, Rocha EPC. (2018). Parallels between experimental and natural evolution of legume symbionts. Nature Communications. 9.  DOI: 10.1038/s41467-018-04778-5 . 

De Meyer SE, Cnockaert M, Moulin L , Howieson JG, Vandamme P. (2018). Symbiotic and non-symbiotic Paraburkholderia isolated from South African Lebeckia ambigua root nodules and the description of Paraburkholderia fynbosensis sp. nov. Int J Syst Evol Microbiol. 68(8): 2607-2614. DOI:10.1099/ijsem.0.002884

Fiorilli V, Vannini C, Ortolani F, Garcia-Seco D, Chiapello M, Novero M, Domingo G, Terzi V, Morcia C,  Bagnaresi P, Moulin L , Bracale M, Bonfante P. 2018. Omics approaches revealed how arbuscular mycorrhizal symbiosis enhances yield and resistance to leaf pathogen in wheat. Scientific Reports 8(1). DOI:10.1038/s41598-018-27622-8

Klonowska A , Melkonian R, Tisseyre P, Moulin L. (2018). Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbiotic evolutionary history. BMC Genomics. DOI: 10.1186/s12864-018-4487-2

Taha K, Berraho EB, Dekkiche S, Aurag J, Bena G. (2018). Rhizobium laguerreae is the main nitrogen-fixing symbiont of cultivated lentil (Lens culinaris) in Morocco. Syst Appl Microbiol. 41(2): 113-121. DOI: 10.1016/j.syapm.2017.09.008