2024

Jammes M, Golyaev V, Fuentes A, Laboureau N, Urbino C, Plissonneau C, Peterschmitt M, Pooggin MM. (2024) Transcriptome and small RNAome profiling uncovers how a recombinant begomovirus evades RDRγ-mediated silencing of viral genes and outcompetes its parental virus in mixed infection. PLoS Pathog. 20: e1011941. doi: 10.1371/journal.ppat.1011941

2023

Guyot V, Trieu TD, Insisiengmay O, Zhang T, Iskra-Caruana ML, BforBB Consortium, Pooggin MM. (2023) A new genus of alphasatellites associated with banana bunchy top virus in Southeast Asia. Virus Evol. 10: vead076. doi: 10.093/ve/vead076

Miotti N, Sukhikh N, Laboureau N, Casati P, Pooggin MM. (2023) Cannabis Virome Reconstruction and Antiviral RNAi Characterization through Small RNA Sequencing. Plants (Basel). 12: 3925. doi:103390/plants12233925

Guyot V, Ly NS, Trieu TD, Insisiengmay O, Zhang T, Iskra-Caruana ML, BforBB Consortium, Pooggin MM. (2023) Evidence for Dicot Plants as Alternative Hosts of Banana Bunchy Top Virus and Its Alphasatellites in South-East Asia. Pathogens. 12: 1289. doi:10.3390/pathogens12111289

Aknadibossian V, Huguet-Tapia JC, Golyaev V, Pooggin MM, Folimonova SY. (2023) Transcriptomic alterations in the sweet orange vasculature correlate with growth repression induced by a variant of citrus tristeza virus. Front Microbiol. 14: 1162613. doi:10.3389/fmicb.2023.1162613

Jammes M, Urbino C, Diouf MB, Peterschmitt M. (2023) Refining the emergence scenario of the invasive recombinant Tomato yellow leaf curl virus -IS76.  Virology. Jan;578:71-80. doi:10.1016/j.virol.2022.11.006.

2022

Chesnais Q, Golyaev V, Velt A, Rustenholz C, Verdier M, Brault V, Pooggin MM, Drucker M. (2022) Transcriptome responses of the aphid vector Myzus persicae are shaped by identities of the host plant and the virus. Peer Community Journal, 2: e82. doi : 10.24072/pcjournal.208. https://peercommunityjournal.org/articles/10.24072/pcjournal.208/

Alexandrova A, Yeriskina Y, Nargilova R, Kryldakov R, Tokbergenova Z, Pooggin M, Iskakov B, Karpova O. (2022) Genome sequence analysis, RT-PCR diagnostics and construction of viral protein-expression cassetes for Kazakh isolate of ordinary and Andean strains of potato virus S. Eurasian Journal of Applied Biotechnology, 2: 72–82. doi: 10.11134/btp.2.2022.10.

Alexandrova A, Karpova O, Kryldakov R, Golyaev V, Nargilova R, Iskakov B, Pooggin MM. (2022) Virus Elimination from Naturally Infected Field Cultivars of Potato (Solanum tuberosum) by Transgenic RNA Interference. Int J Mol Sci. 23: 8020. doi: 10.3390/ijms23148020.

Chesnais Q, Golyaev V, Velt A, Rustenholz C, Brault V, Pooggin MM, Drucker M. (2022) Comparative Plant Transcriptome Profiling of Arabidopsis thaliana Col-0 and Camelina sativa var. Celine Infested with Myzus persicae Aphids Acquiring Circulative and Noncirculative Viruses Reveals Virus- and Plant-Specific Alterations Relevant to Aphid Feeding Behavior and Transmission. Microbiol Spectr. 10: e0013622. doi: 10.1128/spectrum.00136-22.

Guyot V, Rajeswaran R, Chu HC, Karthikeyan C, Laboureau N, Galzi S, Mukwa LFT, Krupovic M, Kumar PL, Iskra-Caruana ML, Pooggin MM. (2022) A newly emerging alphasatellite affects banana bunchy top virus replication, transcription, siRNA production and transmission by aphids. PLoS Pathog. 18: e1010448. doi: 10.1371/journal.ppat.1010448.

Urbino, C., Jammes, M., Belabess, Z., Troadec, E., Autechaud, A., Peterschmitt, M., 2022. Chapter 31 - Invasive tomato yellow leaf curl virus recombinants challenge virus diagnosis and disease management, in: Gaur, R.K., Sharma, P., Czosnek, H. (Eds.), Geminivirus : Detection, Diagnosis and Management. Academic Press, pp. 497-511. https://www.sciencedirect.com/science/article/abs/pii/B9780323905879000043

2021

Chesnais Q. Verdier M, Burckbuchler M, Brault V, Pooggin M, Drucker M. (2021). Cauliflower mosaic virus protein P6‐TAV plays a major role in alteration of aphid vector feeding behaviour but not performance on infected Arabidopsis. Molecular Plant Pathology, 22 (8): 911-920. https://doi.org/10.1111/mpp.13069

Holeva, MC, Sklavounos A,  Rajeswaran R,  Pooggin MM, Voloudakis AE. (2021).  Topical Application of Double-Stranded RNA Targeting 2b and CP Genes of Cucumber mosaic virus Protects Plants against Local and Systemic Viral Infection. Plants 2021, 10, 963. https://doi.org/10.3390/plants10050963

German-Retana S, Pooggin M, Gallois JL, Ortiz D, Moury B. 2021. Comment les plantes se défendent‑elles face aux virus? In book Plant Immunity, Editors : Lannou C, Roby D, Ravigné V, Hannachi M, Moury B. Publisher: Éditions Quae, Collection: Savoir faire, France. https://www.quae.com/produit/1661/9782759232345/l-immunite-des-plantes

Reynard JS, Turco S, Brodard J, Kellenberger I, Maclot F, Schumpp O, Gugerli P, Pooggin MM. (2021). Identification and Molecular Characterization of a Novel Hordeivirus Associated With Yellow Mosaic Disease of Privet (Ligustrum vulgare) in Europe. Frontiers in Microbiology, 12: 723350. https://doi.org/10.3389/fmicb.2021.723350

Ricciuti E, Laboureau N, Noumbissié G, Chabannes M, Sukhikh N, Pooggin M, Iskra Caruana ML. (2021). Extrachromosomal viral DNA produced by transcriptionally active endogenous viral elements in non-infected banana hybrids impedes quantitative PCR diagnostics of banana streak virus infections in banana hybrids. Journal of General Virology, 102 (11): 001670. https://doi.org/10.1099/jgv.0.001670

Ryckebusch F, Peterschmitt M, Granier M, Sauvion N. (2021). Alfalfa leaf curl virus is efficiently acquired by its aphid vector Aphis craccivora but inefficiently transmitted. J Gen Virol. Feb;102(2). doi: 10.1099/jgv.0.001516

2020

Di Mattia J, Ryckebusch F, Vernerey MS, Pirolles E, Sauvion N, Peterschmitt M, Zeddam JL, Blanc S. 2020. Co-Acquired Nanovirus and Geminivirus Exhibit a Contrasted Localization within Their Common Aphid Vector. Viruses 12:299. doi: 10.3390/v12030299.

Ryckebusch F, Sauvion N, Granier M, Roumagnac P, Peterschmitt M. 2020. Alfalfa leaf curl virus is transmitted by Aphis craccivora in a highly specific circulative manner. Virology. 546: 98-108. doi: 10.1016/j.virol.2020.04.004.

Teycheney PY, Geering ADW, Dasgupta I, Hull R, Kreuze JF, Lockhart B, Muller E, Olszewski N, Pappu H, Pooggin MM, Richert-Pöggeler KR, Schoelz JE, Seal S, Stavolone L, Umber M. 2020. Report Consortium I: ICTV Virus Taxonomy Profile: Caulimoviridae. J Gen Virol. 101: 1025-1026. doi: 10.1099/jgv.0.001497.

Urbino C, Regragui ZF, Granier M, Peterschmitt M. 2020. Fitness advantage of inter-species TYLCV recombinants induced by beneficial intra-genomic interactions rather than by specific mutations. Virology 542: 20-27. doi: 10.1016/j.virol.2020.01.002.

2019

Golyaev V, Candresse T, Rabenstein F, Pooggin MM. 2019. Plant virome reconstruction and antiviral RNAi characterization by deep sequencing of small RNAs from dried leaves. Sci Rep. 9: 19268. doi: 10.1038/s41598-019-55547-3.

Sicard A, Pirolles E, Gallet R, Vernerey MS, Yvon M, Urbino C, Peterschmitt M, Gutierrez S, Michalakis Y, Blanc S. 2019. A multicellular way of life for a multipartite virus. Elife 8: e43599. doi: 10.7554/eLife.43599.

Wang Z, Miao H, Liu J, Xu B, Yao X, Xu C, Zhao S, Fang X, Jia C, Wang J, Zhang J, Li J, Xu Y, Wang J, Ma W, Wu Z, Yu L, Yang Y, Liu C, Guo Y, Sun S, Baurens FC, Martin G, Salmon F, Garsmeur O, Yahiaoui N, Hervouet C, Rouard M, Laboureau N, Habas R, Ricci S, Peng M, Guo A, Xie J, Li Y, Ding Z, Yan Y, Tie W, D'Hont A, Hu W, Jin Z. 2019. Musa balbisiana genome reveals subgenome evolution and functional divergence. Nat Plants 5: 810-821. doi: 10.1038/s41477-019-0452-6.

Granier M, Tomassoli L, Manglli A, Nannini M, Peterschmitt M, Urbino C. 2019. First Report of TYLCV-IS141, a Tomato Yellow Leaf Curl Virus Recombinant Infecting Tomato Plants Carrying the Ty-I Resistance Gene in Sardinia (Italy). Plant Disease 103: 1437-1437. doi : 10.1094/pdis-09-18-1558-pdn.

2018

Pooggin MM. 2018. Small RNA-Omics for Plant Virus Identification, Virome Reconstruction, and Antiviral Defense Characterization. Front Microbiol. 9: 2779. doi: 10.3389/fmicb.2018.02779.

Torre C, Donaire L, Gómez-Aix C, Juárez M, Peterschmitt M, Urbino C, Hernando Y, Agüero J, Aranda MA. 2018. Characterization of Begomoviruses Sampled during Severe Epidemics in Tomato Cultivars Carrying the Ty-1 Gene. Int J Mol Sci. 19: 2614. doi: 10.3390/ijms19092614.

Massart S, Chiumenti M, De Jonghe K, Glover R, Haegeman A, Koloniuk I, Komínek P, Kreuze J, Kutnjak D, Lotos L, Maclot F, Maliogka V, Maree HJ, Olivier T, Olmos A, Pooggin MM, Reynard JS, Ruiz-García AB, Safarova D, Schneeberger PHH, Sela N, Turco S, Vainio EJ, Varallyay E, Verdin E, Westenberg M, Brostaux Y, Candresse T. 2019. Virus Detection by High-Throughput Sequencing of Small RNAs: Large-Scale Performance Testing of Sequence Analysis Strategies. Phytopathology 109: 488-497. doi: 10.1094/PHYTO-02-18-0067-R.

Rojas MR, Macedo MA, Maliano MR, Soto-Aguilar M, Souza JO, Briddon RW, Kenyon L, Rivera Bustamante RF, Zerbini FM, Adkins S, Legg JP, Kvarnheden A, Wintermantel WM, Sudarshana MR, Peterschmitt M, Lapidot M, Martin DP, Moriones E, Inoue-Nagata AK, Gilbertson RL. 2018. World Management of Geminiviruses. Annu Rev Phytopathol. 56: 637-677. doi: 10.1146/annurev-phyto-080615-100327.

Pooggin MM, Ryabova LA. 2018. Ribosome Shunting, Polycistronic Translation, and Evasion of Antiviral Defenses in Plant Pararetroviruses and Beyond. Front Microbiol. 9: 644. doi: 10.3389/fmicb.2018.00644.

Conflon D, Granier M, Tiendrébéogo F, Gentit P, Peterschmitt M, Urbino C. 2018. Accumulation and transmission of alphasatellite, betasatellite and tomato yellow leaf curl virus in susceptible and Ty-1-resistant tomato plants. Virus Res. 253: 124-134. doi: 10.1016/j.virusres.2018.06.003.

Krupovic M, Blomberg J, Coffin JM, Dasgupta I, Fan H, Geering AD, Gifford R, Harrach B, Hull R, Johnson W, Kreuze JF, Lindemann D, Llorens C, Lockhart B, Mayer J, Muller E, Olszewski NE, Pappu HR, Pooggin MM, Richert-Pöggeler KR, Sabanadzovic S, Sanfaçon H, Schoelz JE, Seal S, Stavolone L, Stoye JP, Teycheney PY, Tristem M, Koonin EV, Kuhn JH. 2018. Ortervirales: New Virus Order Unifying Five Families of Reverse-Transcribing Viruses. J Virol. 92: e00515-18. doi: 10.1128/JVI.00515-18.

Bernardo P, Charles-Dominique T, Barakat M, Ortet P, Fernandez E, Filloux D, Hartnady P, Rebelo TA, Cousins SR, Mesleard F, Cohez D, Yavercovski N, Varsani A, Harkins GW, Peterschmitt M, Malmstrom CM, Martin DP, Roumagnac P. 2018. Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale. ISME J. 12: 173-184. doi: 10.1038/ismej.2017.155.

Turco S, Golyaev V, Seguin J, Gilli C, Farinelli L, Boller T, Schumpp O, Pooggin MM. 2018. Small RNA-Omics for Virome Reconstruction and Antiviral Defense Characterization in Mixed Infections of Cultivated Solanum Plants. Mol Plant Microbe Interact. 31: 707-723. doi: 10.1094/MPMI-12-17-0301-R.

Belabess Z, Urbino C, Granier M, Tahiri A, Blenzar A, Peterschmitt M. 2018. The typical RB76 recombination breakpoint of the invasive recombinant tomato yellow leaf curl virus of Morocco can be generated experimentally but is not positively selected in tomato. Virus Res. 243: 44-51. doi: 10.1016/j.virusres.2017.10.002.

Malpica-López N, Rajeswaran R, Beknazariants D, Seguin J, Golyaev V, Farinelli L, Pooggin MM. 2018. Revisiting the Roles of Tobamovirus Replicase Complex Proteins in Viral Replication and Silencing Suppression. Mol Plant Microbe Interact. 31: 125-144. doi: 10.1094/MPMI-07-17-0164-R.

2017

Pooggin MM. 2017. RNAi-mediated resistance to viruses: a critical assessment of methodologies. Curr Opin Virol. 26: 28-35. doi: 10.1016/j.coviro.2017.07.010.

Palanga E, Martin DP, Galzi S, Zabré J, Bouda Z, Neya JB, Sawadogo M, Traore O, Peterschmitt M, Roumagnac P, Filloux D. 2017. Complete genome sequences of cowpea polerovirus 1 and cowpea polerovirus 2 infecting cowpea plants in Burkina Faso. Arch Virol. 162: 2149-2152. doi: 10.1007/s00705-017-3327-z.

Palanga E, Longué RDS, Koala M, Néya JB, Traoré O, Martin DP, Peterschmitt M, Filloux D, Roumagnac P, 2017. First report of Maize yellow mosaic virus infecting maize in Burkina Faso. New Disease Reports 35: 26. http://dx. doi.org/10.5197/j.2044-0588.2017.035.026

2016

Karthikeyan C, Patil BL, Borah BK, Resmi TR, Turco S, Pooggin MM, Hohn T, Veluthambi K. 2016. Emergence of a Latent Indian Cassava Mosaic Virus from Cassava Which Recovered from Infection by a Non-Persistent Sri Lankan Cassava Mosaic Virus. Viruses 8: 264. doi: 10.3390/v8100264.

Belabess Z, Peterschmitt M, Granier M, Tahiri A, Blenzar A, Urbino C. 2016. The non-canonical tomato yellow leaf curl virus recombinant that displaced its parental viruses in southern Morocco exhibits a high selective advantage in experimental conditions. J Gen Virol. 97(12):3433-3445. doi: 10.1099/jgv.0.000633.

Mukwa LF, Gillis A, Vanhese V, Romay G, Galzi S, Laboureau N, Kalonji-Mbuyi A, Iskra-Caruana ML, Bragard C. 2016. Low genetic diversity of Banana bunchy top virus, with a sub-regional pattern of variation, in Democratic Republic of Congo. Virus Genes 52: 900-905. doi: 10.1007/s11262-016-1383-1.

Zvereva AS, Golyaev V, Turco S, Gubaeva EG, Rajeswaran R, Schepetilnikov MV, Srour O, Ryabova LA, Boller T, Pooggin MM. 2016. Viral protein suppresses oxidative burst and salicylic acid-dependent autophagy and facilitates bacterial growth on virus-infected plants. New Phytol. 211: 1020-34. doi: 10.1111/nph.13967.

Palanga E, Filloux D, Martin DP, Fernandez E, Gargani D, Ferdinand R, Zabré J, Bouda Z, Neya JB, Sawadogo M, Traore O, Peterschmitt M, Roumagnac P. 2016. Metagenomic-Based Screening and Molecular Characterization of Cowpea-Infecting Viruses in Burkina Faso. PLoS One 11: e0165188. doi: 10.1371/journal.pone.0165188.

Seguin J, Otten P, Baerlocher L, Farinelli L, Pooggin MM. 2016. MISIS-2: A bioinformatics tool for in-depth analysis of small RNAs and representation of consensus master genome in viral quasispecies. J Virol Methods. 233: 37-40. doi: 10.1016/j.jviromet.2016.03.005.

Duroy PO, Perrier X, Laboureau N, Jacquemoud-Collet JP, Iskra-Caruana ML. 2016. How endogenous plant pararetroviruses shed light on Musa evolution. Ann Bot. 117: 625-41. doi: 10.1093/aob/mcw011.

Fuentes A, Carlos N, Ruiz Y, Callard D, Sánchez Y, Ochagavía ME, Seguin J, Malpica-López N, Hohn T, Lecca MR, Pérez R, Doreste V, Rehrauer H, Farinelli L, Pujol M, Pooggin MM. 2016. Field Trial and Molecular Characterization of RNAi-Transgenic Tomato Plants That Exhibit Resistance to Tomato Yellow Leaf Curl Geminivirus. Mol Plant Microbe Interact. 29: 197-209. doi: 10.1094/MPMI-08-15-0181-R.

Kvarnheden A, Lett JM, Peterschmitt M. 2016. Mastreviruses: Tropical and temperate leafhopper-borne geminiviruses. In book: Vector-mediated transmission of plant pathogens, Editor: Brown, J.K., The American Phytopathological Society, St. Paul, Minnesota, USA, pp. 231-241. https://apsjournals.apsnet.org/doi/abs/10.1094/9780890545355.016

Pooggin MM. 2016. Role of Small RNAs in Virus-Host Interaction. In book: Plant-Virus Interactions: Molecular Biology, Intra- and Intercellular Transport. Editor: T. Kleinow, Publisher: Springer International Publishing AG, Switzerland.   doi: 10.1007/978-3-319-25489-0_6.